Regulated Non-Quarantine Projects

Two EU funded projects for the benefit of the whole EPPO region

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Justification for qualification based on EPPO PM 4 Standards
Justification for disqualification
Additional or non-conclusive information
Standard text



NAME OF THE ORGANISM: Agrobacterium & Allorhizobium vitis (Ti-plasmid) (1AGRBG & AGRBVI)


GENERAL INFORMATION ON THE PEST

Name as submitted in the project specification (if different):
 
Agrobacterium

Pest category:
 
Bacteria


1- Identity of the pest/Level of taxonomic listing:

Is the organism clearly a single taxonomic entity and can it be adequately distinguished from other entities of the same rank?
 
Yes

Is the pest defined at the species level or lower?:
 
No

Can listing of the pest at a taxonomic level higher than species be supported by scientific reasons or can species be identified within the taxonomic rank which are the (main) pests of concern?
 
  • Yes: Vine sector
If necessary, please list the species:
 
-

Is it justified that the pest is listed at a taxonomic rank below species level?
 
Not relevant

Conclusion:
 
  • Candidate: Vine sector
Justification (if necessary):
 
All available information points to the fact that the pathogenic character of agrobacteria depends on the presence of the tumour-inducing plasmid (Ti-plasmid) (Weisberg et al., 2023), although some genes in the chromosome may also have some degree of involvement (Knauf et al, 1982). It seems clear that the pathogenic character is conferred by the plasmid. The Ti plasmid is not a sufficient but a necessary condition; as in any disease, there are other factors (host, environment) that influence whether or not the disease occurs. If the plasmid is present, the probability of disease is very high; if the plasmid is not present, there will be no disease. Therefore, since many agrobacteria are present in the environment, and most of them are not pathogenic, neither the listing at genus nor at species level will give a good indication about disease development. Consequently, the Fruit SEWG recommended to consider the presence (or not) of the Ti-plasmid, to know if the probability of disease development will be very high or not. This was also supported by EUROSEEDS in responses to the questionnaire, also indicating that several Agrobacterium isolates are not causing diseases. A. tumefaciens, A. rhizogenes, A. rubi, A. vitis and several other species can carry a Ti-Plasmid that is the actual cause of symptomatic galls causing the disease.

In Rubus, different species are involved e.g. Agrobacterium tumefaciens, A. rhizogenes (currently considered as Rhizobium rhizogenes; Flores-Félix et al., 2020) and A. rubi. New species have also been isolated e.g. Agrobacterium arsenijevicii and Rhizobium tumorigenes. In the responses to the questionnaire, DE, ES, EUROSEEDS, FR, LT, NL, SI and SK considered that Agrobacterium was a pest of concern on Rubus. DE supported listing at genus since several species are considered important and causing similar damage. ES, FR, LT, NL and SK supported listing at species level. The Fruit SEWG suggested to consider the listing of all Agrobacterium & Rhizobium harbouring the Ti-plasmid.

In Vitis, crown gall is caused by Agrobacterium (e.g. A. tumefaciens) as well as Allorhizobium vitis, both belonging to the family Rhizobiaceae. Indeed, based on the analysis of the rrs, recA, atpD and rpoB genes, Mousavi et al. (2015) proposed to transfer Rhizobium vitis (initially Agrobacterium vitis) to the genus Allorhizobium (Flores-Félix et al., 2020). This was later validated in the International Journal of Systematic and Evolutionary Microbiology (IJSEM, Oren & Garriti, 2016). In the responses to the questionnaire, BE, CY, ES, NL, SI and SK considered that Agrobacterium was a pest of concern on Vitis. DE and CY supported listing at genus since several species are considered important and causing similar damage. BE, ES, FR, LT, NL and SK supported listing at species level. The Fruit SEWG suggested to consider the listing of all Agrobacterium and Allorhizobium vitis harbouring the Ti-plasmid.

Remark: DE commented that a prerequisite for the categorisation of Agrobacterium / Allorhizobium vitis as RNQP for Vitis is the availability of a reliable test system that is also suitable for routine testing. Although PCR-based testing for latent bacterial infection directly from the wood is possible, it is still very unreliable without prior isolation of vital bacterial cells for multiplication on specific (semi-selective) media. The number of bacterial cells in the wood is usually so low that false negative results are frequent. Although tests with live isolation are significantly more reliable, they are time-consuming and labour-intensive and therefore expensive due to the high experimental effort involved. They are therefore only suitable or justified for certain scientific questions but not for general routine testing.
Therefore, DE did not recommend classification of Agrobacterium / Allorhizobium vitis as RNQP for Vitis.
Experts from the Fruit SEWG agreed that detection can be difficult because these bacteria may only be present in low concentration or unevenly distributed. Detection in asymptomatic material is obviously less reliable than detection from symptomatic material when the number of bacteria is much higher (Anonymous, 2024). Testing grapevine roots only allows to detect less than 40% of infected grapevine material (Riedle-Bauer et al., 2012). Several factors, apart from the pathogen concentration in nursery stock, such as site characteristics, management practices and environmental conditions, should be taken into account (Voegel and Nelson, 2018). In any case, efforts have been made to develop PCR tests to circumvent these handicaps, and detection limits are comparable to those obtained in other bacterial models (Nguyen-Huu et al., 2021; Turgut and Basim, 2021; Voegel et al., 2023). Sawada et al. (1995) demonstrated that PCR analysis utilizing the primer set (VCF/VCR) can amplify the expected 730-bp products from most (75 of 77) pathogenic agrobacteria harboring Ti or Ri plasmids. With the universal primer set (VCF/VCR), this method, rapid and easy, can be considered convenient for routine detection of Ti and Ri plasmids from pure cultures, and will extend the capability for studying the molecular epidemiology and etiology of Agrobacterium species.

Although the disease is not caused by a clear single taxonomic entity (if considering the bacteria), this criteria can be considered as fulfilled when considering the Ti-plasmid.

2 – Status in the EU:
 
Is this pest already a quarantine pest for the whole EU?
 
No

Presence in the EU:
 
Yes

List of countries (EPPO Global Database):
 
-

Conclusion:
 
Candidate

Justification (if necessary):
 

HOST PLANT N°1: Vitis (1VITG) for the Vine sector.


Origin of the listing:
 
New proposal

Plants for planting:
 
Plants intended for planting, except seeds


3 - Is the pest already listed in a PM4 standard on the concerned host plant?
 
No
 
Conclusion:
 
Evaluation continues

 
Justification (if necessary):
 
EPPO Standard PM 4/8 Pathogen-tested material of grapevine varieties and rootstocks recommends inspection for freedom from crown gall (Agrobacterium tumefaciens and A. vitis). However, it is noted that latent infections of A. tumefaciens and A. vitis may occur.

4 - Are the listed plants for planting the main* pathway for the "pest/host/intended use" combination? (*: significant compared to others):
 
Yes
 
Conclusion:
 
Candidate

 
Justification:
 
Agrobacteria are known to be soil-borne plant pathogens. Agrobacteria will remain active in the soil for a minimum of two years in the absence of a host or longer on decaying infected tissues (Watt, 2010), so soils are generally considered as sources of infection; but while this is true for fruit trees, grapevine crown gall is usually due to infected propagation material (Tzfira and Citovsky, 2008). A recent study in Canada showed that A. vitis was present in the planting material of all nurseries tested (Voegel et al., 2023). The number of pathogenic agrobacteria is known to show a significant seasonal fluctuation: during the growing season, the number of pathogenic bacteria is high, but decreases drastically during autumn and winter, indicating an essential role of the weed rhizosphere in regulating A. tumefaciens populations in nursery soils (Krimi et al., 2002). In fact, some studies in US vineyards have shown that A. vitis can only be isolated from the rhizosphere of diseased plants. Analysis of soils from several vineyards in Amenia revealed that only A. tumefaciens and not A. vitis was detected in the samples (Jäger et al., 1990), confirming that in the case of grapevine it is not the soil but the infected plant material that is mainly responsible for the spread of the disease (Tzfira and Citovsky, 2008). However, A. vitis survives in root pieces for years and can therefore initiate new infections from soil on which previously infected plants were grown (Burr et al., 1995). Although infected propagating material is the main source of A. vitis on grapevines, infection of Agrobacterium-free grapevines from soil has also been reported (Pu and Goodman, 1993), probably favoured by nematodes, as agrobacteria can enter roots through nematode wounds (Süle et al., 1995; Rubio-Cabetas et al., 2001). By analysing the xylem, it was found that 53% of originally pathogen-free grapevines planted in infested soil contained Agrobacterium two years after planting (Pu and Goodman, 1993). Wild grapevines are a significant reservoir of inoculum (Orel et al., 2017).

There are no references to Agrobacterium being a seed pathogen in Vitis.

In the case of grapevine, the Fruit SEWG considered that the importance of soil-borne inoculum in replanted vineyards is not well understood and the primary source of diseased vines reported appears to be through propagation of diseased wood (PlantwisePlus Knowledge Bank, 2012).

5 - Economic impact:

Are there documented reports of any economic impact on the host?
 
Yes

Justification:
 
It is said that crown gall is one of the most devastating diseases of grapevine (Burr and Otten, 1999), causing large economic losses associated with lower productivity and the cost of vine replacement, because Agrobacterium can survive for a long time in infected roots, on decaying vines and in the soil (Kuzmanović et al., 2018), even after the plants have been removed, as the bacterium is active and viable in the soil and can infect new planting material (Vizitiu et al., 2012). Incidence may range from a few vines in a vineyard to 100% of the vines. In addition to reducing vigour and yield, gall development may result in the girdling of vines. The amount of crown gall present from year to year appears to be related to the severity of the preceding winter and the maturity of the vines (PlantwisePlus Knowledge Bank, 2012). But the only study with economic data that seems to exist is from 2004 in Pennsylvania, where losses amounted to 46,500 US dollars per 0.4 hectares over a 6-year period (Stewart and Wenner, 2004).

What is the likely economic impact of the pest irrespective of its infestation source in the absence of phytosanitary measures? (= official measures)
 
Medium

Is the economic impact due to the presence of the pest on the named host plant for planting, acceptable to the propagation and end user sectors concerned?
 
?

Is there unacceptable economic impact caused to other hosts (or the same host with a different intended use) produced at the same place of production due to the transfer of the pest from the named host plant for planting?
 
No

Conclusion:
 

Justification:
 
Evidence of its economic impact is available in the literature and was rated here for young plants only (Medium for young vines. No impact for old vines when they survived).
Symptom expression highly depends on environmental conditions during the first years, at the time the plant builds its main vascular system: Cold winter followed by a warm spring will cause tumor formation if infected. It also depends on stress factors.
Lower impact is observed in warmer countries. Less impact is expected in the future in Europe with global warming.

6 - Are there feasible and effective measures available to prevent the presence of the pest on the plants for planting at an incidence above a certain threshold (including zero) to avoid an unacceptable economic impact as regards the relevant host plants?
 
No
 
Conclusion:
 
Not candidate

Justification:
 
There are studies in which the pathogen was detected in all nursery material for planting, although with uneven distribution between nurseries (Voegel et al., 2023). Once the crown gall pathogen is present in regions or vineyards, it is practically impossible to eradicate.
To date, the most successful strategy for disease prevention is planting healthy nursery material in non-infected soil (Johnson et al., 2013; Gordon et al., 2024). Propagating material should be obtained from disease-free sources (PlantwisePluse Knowledge Bank, 2023; Vizitiu et al., 2012)
However, systemic survival of the pathogen in asymptomatic grapevines makes it difficult to produce clean grapevine stock (Burr et al., 2016), and the pathogen is often disseminated through the vegetative propagation of infected symptomless vines or with rhizosphere soil (Burr et al., 1987; Yepes et al., 2019). Disease expression highly depends on environmental conditions and the Fruit SEWG considered that testing asymptomatic material was not reliable enough.

7- Is the quality of the data sufficient to recommend the pest to be listed as a RNQP?
 
No
 
Conclusion:
 

Justification:
 

CONCLUSION ON THE STATUS:
 
Disqualified: uncertainty whether economic impact should be considered as unacceptable. No effective and feasible measures available. Several other uncertainties.


8 - Tolerance level:

Is there a need to change the Tolerance level:
 
No (new regulation proposal)

Proposed Tolerance levels:
 
No listing.

9 - Risk management measures:

Is there a need to change the Risk management measure:
 
No

Proposed Risk management measure:
 
No listing.

Justification (if necessary):
 
Testing soil for Agrobacterium presents challenges due to low concentrations and the inhibitors of PCR present in soil.
Hot water treatment is applied in some nurseries, but is not completely effective, as there is work on the survival of A. vitis (Burr et al., 1996, Am J, Enol Vitic 47: 119-123)]

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